############# Start of Description of junction: j13 # Number of strands: NUM_STRANDS = 7 LILLEY = 2HS2HS3HS3HS2HS2HS6 FINGERPRINT = 30:41:42:43:63:65:65:76:92:101:102:104:118:123:130:130:134:143:144:157:165 LOOP_LENGTH_SUM = 18 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 926 S1_NAME_ID3 = 931 S1_NUM_ID5_ORIG = 926 S1_NUM_ID3_ORIG = 931 S1_NAME2_ID5 = 928 S1_NAME2_ID3 = 929 S1_NUM2_ID5_ORIG = 928 S1_NUM2_ID3_ORIG = 929 S1_SQ2 = GA S1_SQLEN2 = 2 S1_SQ = AUGACC S1_SQLEN = 6 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 910 S2_NAME_ID3 = 917 S2_NUM_ID5_ORIG = 910 S2_NUM_ID3_ORIG = 917 S2_NAME2_ID5 = 912 S2_NAME2_ID3 = 915 S2_NUM2_ID5_ORIG = 912 S2_NUM2_ID3_ORIG = 915 S2_SQ2 = AAAC S2_SQLEN2 = 4 S2_SQ = CGAAACAU S2_SQLEN = 8 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 1039 S3_NAME_ID3 = 1047 S3_NUM_ID5_ORIG = 1039 S3_NUM_ID3_ORIG = 1047 S3_NAME2_ID5 = 1041 S3_NAME2_ID3 = 1045 S3_NUM2_ID5_ORIG = 1041 S3_NUM2_ID3_ORIG = 1045 S3_SQ2 = UUCCG S3_SQLEN2 = 5 S3_SQ = GAUUCCGGU S3_SQLEN = 9 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 1067 S4_NAME_ID3 = 1075 S4_NUM_ID5_ORIG = 1067 S4_NUM_ID3_ORIG = 1075 S4_NAME2_ID5 = 1069 S4_NAME2_ID3 = 1073 S4_NUM2_ID5_ORIG = 1069 S4_NUM2_ID3_ORIG = 1073 S4_SQ2 = CAGGA S4_SQLEN2 = 5 S4_SQ = ACCAGGAGG S4_SQLEN = 9 S4_CHAR = 0 ## Properties of strand 5 S5_NAME_ID5 = 1084 S5_NAME_ID3 = 1091 S5_NUM_ID5_ORIG = 1084 S5_NUM_ID3_ORIG = 1091 S5_NAME2_ID5 = 1086 S5_NAME2_ID3 = 1089 S5_NUM2_ID5_ORIG = 1086 S5_NUM2_ID3_ORIG = 1089 S5_SQ2 = AGAG S5_SQLEN2 = 4 S5_SQ = CCAGAGAU S5_SQLEN = 8 S5_CHAR = 0 ## Properties of strand 6 S6_NAME_ID5 = 1265 S6_NAME_ID3 = 1272 S6_NUM_ID5_ORIG = 1265 S6_NUM_ID3_ORIG = 1272 S6_NAME2_ID5 = 1267 S6_NAME2_ID3 = 1270 S6_NUM2_ID5_ORIG = 1267 S6_NUM2_ID3_ORIG = 1270 S6_SQ2 = CCGU S6_SQLEN2 = 4 S6_SQ = GUCCGUAC S6_SQLEN = 8 S6_CHAR = 0 ## Properties of strand 7 S7_NAME_ID5 = 1284 S7_NAME_ID3 = 1295 S7_NUM_ID5_ORIG = 1284 S7_NUM_ID3_ORIG = 1295 S7_NAME2_ID5 = 1286 S7_NAME2_ID3 = 1293 S7_NUM2_ID5_ORIG = 1286 S7_NUM2_ID3_ORIG = 1293 S7_SQ2 = AAUCGAGU S7_SQLEN2 = 8 S7_SQ = GUAAUCGAGUAG S7_SQLEN = 12 S7_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 8 H1_INID2 = 3 H1_OUTID2 = 6 H1_INID2_ORIG = 928 H1_OUTID2_ORIG = 915 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 57.70210122475721 H1_P_Y = 91.34657662385025 H1_P_Z = 80.76908948472338 # Orientation: H1_DX_X = 0.14206739450153805 H1_DX_Y = -0.9870562701014194 H1_DX_Z = 0.07440950929162682 H1_DY_X = 0.22770425031495733 H1_DY_Y = -0.040567635448397255 H1_DY_Z = -0.9728849065242144 H1_DZ_X = 0.9633107649185959 H1_DZ_Y = 0.15515858534931226 H1_DZ_Z = 0.21899356973287354 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 6 H2_INID2 = 3 H2_OUTID2 = 4 H2_INID2_ORIG = 1041 H2_OUTID2_ORIG = 929 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 41.00575080999919 H2_P_Y = 83.5014375618633 H2_P_Z = 70.61149696811798 # Orientation: H2_DX_X = -0.422581231110847 H2_DX_Y = 0.43395540519034626 H2_DX_Z = 0.7956807207787051 H2_DY_X = -0.35535225381072877 H2_DY_Y = 0.7282939890179705 H2_DY_Z = -0.5859288704885017 H2_DZ_X = -0.833756486526184 H2_DZ_Y = -0.5303494808768789 H2_DZ_Z = -0.15355633920209755 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 9 H3_INID2 = 3 H3_OUTID2 = 7 H3_INID2_ORIG = 1069 H3_OUTID2_ORIG = 1045 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 47.34417960553871 H3_P_Y = 89.46448592891555 H3_P_Z = 97.92670327296868 # Orientation: H3_DX_X = -0.21158671200956292 H3_DX_Y = 0.9106297756084132 H3_DX_Z = 0.35494291805350997 H3_DY_X = -0.7580301679703467 H3_DY_Y = -0.38214357618365113 H3_DY_Z = 0.5285419109478511 H3_DZ_X = 0.6169451578121183 H3_DZ_Y = -0.15722499469528373 H3_DZ_Z = 0.7711413445635316 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 9 H4_INID2 = 3 H4_OUTID2 = 7 H4_INID2_ORIG = 1086 H4_OUTID2_ORIG = 1073 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 32.798398134509064 H4_P_Y = 101.71145433189666 H4_P_Z = 104.04227016373824 # Orientation: H4_DX_X = -0.983131954225172 H4_DX_Y = 0.1695555057541469 H4_DX_Z = 0.06857471144557792 H4_DY_X = -0.05088000153927652 H4_DY_Y = -0.6136795105407487 H4_DY_Z = 0.7879141347798111 H4_DZ_X = 0.17567807496883603 H4_DZ_Y = 0.7711344816638075 H4_DZ_Z = 0.6119549208596453 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 8 H5_INID2 = 3 H5_OUTID2 = 6 H5_INID2_ORIG = 1267 H5_OUTID2_ORIG = 1089 H5_INSEQ_CHAR = 0 H5_OUTSEQ_CHAR = 0 # Position: H5_P_X = 12.089446118264323 H5_P_Y = 97.13416121888703 H5_P_Z = 93.93807123749177 # Orientation: H5_DX_X = -0.14455454881479213 H5_DX_Y = 0.9300711245188893 H5_DX_Z = -0.3377450010778915 H5_DY_X = -0.9742950688807461 H5_DY_Y = -0.07418449669572169 H5_DY_Z = 0.21271055264060124 H5_DZ_X = 0.1727804999750262 H5_DZ_Y = 0.35981156705442174 H5_DZ_Z = 0.916887416776035 ## Properties of helix 6 H6_INID = 1 H6_OUTID = 8 H6_INID2 = 3 H6_OUTID2 = 6 H6_INID2_ORIG = 1286 H6_OUTID2_ORIG = 1270 H6_INSEQ_CHAR = 0 H6_OUTSEQ_CHAR = 0 # Position: H6_P_X = 10.080759573177971 H6_P_Y = 90.09332978213413 H6_P_Z = 72.6559952754898 # Orientation: H6_DX_X = 0.7018116999452122 H6_DX_Y = -0.6653745552256964 H6_DX_Z = 0.25443474424344004 H6_DY_X = -0.7087397994380691 H6_DY_Y = -0.6881612785022782 H6_DY_Z = 0.15531243177090914 H6_DZ_X = 0.07175119868338165 H6_DZ_Y = -0.28932811136894543 H6_DZ_Z = -0.9545370655240077 ## Properties of helix 7 H7_INID = 1 H7_OUTID = 12 H7_INID2 = 3 H7_OUTID2 = 10 H7_INID2_ORIG = 912 H7_OUTID2_ORIG = 1293 H7_INSEQ_CHAR = 0 H7_OUTSEQ_CHAR = 0 # Position: H7_P_X = 30.834687499434036 H7_P_Y = 99.68958443039016 H7_P_Z = 77.55527723797412 # Orientation: H7_DX_X = 0.9598122570425147 H7_DX_Y = -0.2180763540995656 H7_DX_Z = -0.1766440913634142 H7_DY_X = -0.27165497027562324 H7_DY_Y = -0.8799638053334746 H7_DY_Z = -0.3897015247950293 H7_DZ_X = -0.07045571911149295 H7_DZ_Y = 0.42202654547512 H7_DZ_Z = -0.9038415716035786 ############# END of Description of junction: j13