#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS8HS7
FINGERPRINT = 38:66:72:82:104:109:120:125:138:169
LOOP_LENGTH_SUM = 17
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  94
S1_NAME_ID3 = 107
S1_NUM_ID5_ORIG =  94
S1_NUM_ID3_ORIG = 107
S1_NAME2_ID5 =  96
S1_NAME2_ID3 = 105
S1_NUM2_ID5_ORIG =  96
S1_NUM2_ID3_ORIG = 105
S1_SQ2 = CGGCGGACGG
S1_SQLEN2 = 10
S1_SQ = AGCGGCGGACGGGU
S1_SQLEN = 14
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 68
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 68
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 66
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 66
S2_SQ2 = CAAGUCGUG
S2_SQLEN2 = 9
S2_SQ = UGCAAGUCGUGCG
S2_SQLEN = 13
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  308
S3_NAME_ID3 = 313
S3_NUM_ID5_ORIG =  308
S3_NUM_ID3_ORIG = 313
S3_NAME2_ID5 =  310
S3_NAME2_ID3 = 311
S3_NUM2_ID5_ORIG =  310
S3_NUM2_ID3_ORIG = 311
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  330
S4_NAME_ID3 = 335
S4_NUM_ID5_ORIG =  330
S4_NUM_ID3_ORIG = 335
S4_NAME2_ID5 =  332
S4_NAME2_ID3 = 333
S4_NUM2_ID5_ORIG =  332
S4_NUM2_ID3_ORIG = 333
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  344
S5_NAME_ID3 = 351
S5_NUM_ID5_ORIG =  344
S5_NUM_ID3_ORIG = 351
S5_NAME2_ID5 =  346
S5_NAME2_ID3 = 349
S5_NUM2_ID5_ORIG =  346
S5_NUM2_ID3_ORIG = 349
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 13
H1_INID2 = 3
H1_OUTID2 = 11
H1_INID2_ORIG = 96
H1_OUTID2_ORIG = 66
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 98.74022598960325
H1_P_Y = 191.83703562388405
H1_P_Z = 166.63331216829343
# Orientation:
H1_DX_X = 0.40573749264474657
H1_DX_Y = 0.47473479969866617
H1_DX_Z = -0.7810275008073688
H1_DY_X = -0.8906807955981577
H1_DY_Y = 0.3971228665241142
H1_DY_Z = -0.22131685258082712
H1_DZ_X = 0.2050970682749096
H1_DZ_Y = 0.7854427406493301
H1_DZ_Z = 0.5839648052291295
## Properties of helix 2
H2_INID = 1
H2_OUTID = 14
H2_INID2 = 3
H2_OUTID2 = 12
H2_INID2_ORIG = 310
H2_OUTID2_ORIG = 105
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 85.99007688294357
H2_P_Y = 153.71754817374054
H2_P_Z = 150.45497690172155
# Orientation:
H2_DX_X = -0.9062590177321255
H2_DX_Y = 0.1981501381548867
H2_DX_Z = 0.373404760987853
H2_DY_X = -0.38507927548275234
H2_DY_Y = -0.022587432251327755
H2_DY_Z = -0.9226070450077657
H2_DZ_X = -0.174380458689825
H2_DZ_Y = -0.9799113891845082
H2_DZ_Z = 0.09677357580267199
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 332
H3_OUTID2_ORIG = 311
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 77.93314684353359
H3_P_Y = 173.15579773413992
H3_P_Z = 144.20546396899977
# Orientation:
H3_DX_X = -0.4400573829963008
H3_DX_Y = -0.6295063640276055
H3_DX_Z = -0.6403680483278151
H3_DY_X = 0.025464230021540857
H3_DY_Y = 0.7040938811325361
H3_DY_Z = -0.7096501811041094
H3_DZ_X = 0.8976085297388039
H3_DZ_Y = -0.32859328082059847
H3_DZ_Z = -0.29381181586128946
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 346
H4_OUTID2_ORIG = 333
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 63.838230899363
H4_P_Y = 181.22689561893716
H4_P_Z = 148.44867542154964
# Orientation:
H4_DX_X = -0.24223102339827562
H4_DX_Y = -0.748509715375377
H4_DX_Z = 0.6172984183457118
H4_DY_X = 0.5312674545954081
H4_DY_Y = 0.43005407090106473
H4_DY_Z = 0.72993724921335
H4_DZ_X = -0.8118368204209219
H4_DZ_Y = 0.5047640063337724
H4_DZ_Z = 0.29348641351643323
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 349
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 71.67935831670052
H5_P_Y = 165.03541422026225
H5_P_Z = 161.76974543920423
# Orientation:
H5_DX_X = 0.5332419194069615
H5_DX_Y = -0.4172342370300157
H5_DX_Z = 0.73591347782002
H5_DY_X = -0.4160409195152397
H5_DY_Y = 0.6281004316132908
H5_DY_Z = 0.6575711376696347
H5_DZ_X = -0.7365887649673368
H5_DZ_Y = -0.6568146155934755
H5_DZ_Z = 0.1613429641066091
#############  END of Description of junction: j1