RNAJunction Database - Junction Profile:6408
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 6408: 1VP0_j2_B-U871_B-A921

Primary Citation: (from PDB entry 1VP0)

A.VILA-SANJURJO B.S.SCHUWIRTH C.W.HAU J.H.CATE STRUCTURAL BASIS FOR THE CONTROL OF TRANSLATION INITIATION DURING STRESS. NAT.STRUCT.MOL.BIOL. V. 11 1054 2004

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1VOU j2 B-U871 B-A921 
NC-IUBMB Classification:HS9HS9Cluster Page
Angles: 170°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 2.09856Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: CCUGUAGAGCACUCA 15nt

Strand 2: Chain B: UGAAACUCCGAAGGG 15nt

Valid XHTML 1.0 Transitional