#!/bin/csh
if ($3 == "") then
    echo "Scans for junctions in PDB files. Usage: junctionscan readdir writedir pdbfile. This program was used to generate the RNAJunction database."
    exit
endif
if ($NANOTILER_HOME == "") then
    echo "NANOTILER_HOME environment variable is not defined!"
    exit
endif
java -Xmx1500m -cp $NANOTILER_HOME/classes:$NANOTILER_HOME/jar/printf.jar:. rnadesign.rnamodel.JunctionScan $1 $2 $3 $4


#-ea = enable assertions
